species:   Rhsol
pid:       PID0632
parent:    Rhi-milR-141
paralog:   
locus:     KB317790.1:9288-9395
matures:   ['UGGCCAGUAGUAGUUCCUUGAGACC', 'CUAAGGGGCUAUCAUGGAAGA']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317790.1:9288-9395

2 out of bounds
12 alignments
5 proper strand
4 stranded perfect matches

       *************************                                   **********************                   
GCAGAUGCCUGGCCAGUAGUAGUUCCUUGAGACCAGUUCUAGCAUCCAUUGCCUCCCUGGAUGUCCGGCUAAGGGGCUAUCAUGGAAGAUUUGCAAUAGGUCUGUUUG
((((((..((..(((...((((((((((.((.((.(.....(((((((.........)))))))).))))))))))))))..))).))))))))..............
---------UGGCCAGUAGUAGUUCCUUGAGACC-------------------------------------------------------------------------- l=25 a=0 c
--------------------------------------------------------------------CUAAGGGGCUAUCAUGGAAGA------------------- l=21 a=0 c*
---------UGGCCAGUAGUAGUUCCUUGAGA---------------------------------------------------------------------------- l=23 a=2 ma
---------------------------------------------------------------------UAAGGGGCUAUCAUGGAAGA------------------- l=20 a=1 ma*

---------------------------------------------------------------------UAAGGGGCUAUCAUGGAAGA------------------- l=20 a=1 (ma*)
---------------------------------------------------------------------UAAGGGGCUAUCAUGGAAGAUUUG--------------- l=24 a=1 
--------------------------------------------------------------------CUAAGGGGCUAUCgUGG----------------------- l=17 a=1 
---------UGGCCAGUAGUAGUUCCUUGAGA---------------------------------------------------------------------------- l=23 a=2 (ma)

mb-01111
ax-1111011
ku-01
ss-111110001001
fn-001
